PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_207830_hxcw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HD-ZIP
Protein Properties Length: 847aa    MW: 92322.4 Da    PI: 6.463
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_207830_hxcw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-183895457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Bv9_207830_hxcw.t1 38 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 95
                        5789****************************************************97 PP
2START158.74.4e-501763802204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+
  Bv9_207830_hxcw.t1 176 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGT 265
                         7899******************************************************.7777777777***********999999999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                         ++l++++ +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++  ++++Ra +lpSg+li+p+++g+s +++v+h +l++++++++
  Bv9_207830_hxcw.t1 266 IELIYTQIYAPTTLAPaRDFWTLRYSTTLENGSVVVCERSLSGSGPNTAAPQFIRADMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEV 356
                         **********************************************999****************************************** PP

                         HHHHHHHHHHHHHHHHHHHTXXXX CS
               START 181 lrslvksglaegaktwvatlqrqc 204
                         lr+l++s+ + ++k++ a+l++ +
  Bv9_207830_hxcw.t1 357 LRPLYQSSKVVAQKMTIAALRYIR 380
                         *******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-191595IPR009057Homeodomain-like
PROSITE profilePS5007115.6613296IPR001356Homeobox domain
SMARTSM003899.1E-1634100IPR001356Homeobox domain
CDDcd000861.64E-163797No hitNo description
SuperFamilySSF466893.81E-163798IPR009057Homeodomain-like
PfamPF000464.2E-163895IPR001356Homeobox domain
CDDcd146863.70E-689128No hitNo description
PROSITE profilePS5084825.829166391IPR002913START domain
CDDcd088752.23E-69170383No hitNo description
Gene3DG3DSA:3.30.530.202.5E-18175363IPR023393START-like domain
SuperFamilySSF559612.06E-34175384No hitNo description
SMARTSM002342.3E-40175382IPR002913START domain
PfamPF018521.4E-47176380IPR002913START domain
Gene3DG3DSA:3.40.50.18602.3E-4414468IPR001920Asp/Glu racemase
PfamPF086709.2E-50703846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0016855Molecular Functionracemase and epimerase activity, acting on amino acids and derivatives
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MAMVAHRESS SGSGGSSGMS KHMTAAAAAA SAADAGKYVR YTSEQVEALE RVYAECPKPS  60
SLRRQQLIRE CPILSNIEPR QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN  120
DRLQKQVSQL VCENGFMRQQ LHTAPAMTTD GSCESVVTTT QHSLRDTNNP AGLLSIAEET  180
LAEFLSKATG TAVDWVQMPG MKPGPDSVGI FAISHRCSGV AARACGLVSL EPTKIAEILK  240
DRPSWFRDCR SLEVFTMFPA GNGGTIELIY TQIYAPTTLA PARDFWTLRY STTLENGSVV  300
VCERSLSGSG PNTAAPQFIR ADMLPSGYLI RPCDGGGSII HIVDHLNLEA WSVPEVLRPL  360
YQSSKVVAQK MTIAALRYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLNR GFNDAINGFT  420
DDGWTMLNCD GAEDVIIACN TAKTFMATLN AASSLPMVGG VLCAKASMLL QNVPPAVLVR  480
FLREHRSEWA DFSVDAYSAA ALKANSYAFP GMRATRFTGS QIIMPLGHTI ENEEMLEVIR  540
LEGHSLTPED AYISRDIHLL QICIGIDENA VGACSELVFA PIDEMFPDDA PLLPSGFRII  600
PLDSKPEAAT NRTLDLTSSL EVGPSSNHGA ADATSSGSNR SVLTIAFQFP FESSLQENVA  660
TMARQYVRSV ISSVQRVAMA ISPSGLSPTV GPKLSPGSPE ALTLAHWICQ SYSYHMGAEL  720
LRTSSAADET VLKHLWHHQD AIVCCSLKSL PVLIFANQAG LDMLETTLVA LQDVTLDKIF  780
DDSGRKSLCA DFPKIMQQGY ACLPAGVCTS TMGRHVSYDQ AIAWKVFAAD ETTVHCLAFT  840
FVNWSFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689538.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0J8BQ020.0A0A0J8BQ02_BETVU; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein