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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_207830_hxcw.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 92322.4 Da PI: 6.463 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 38 | 95 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Bv9_207830_hxcw.t1 38 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 95 5789****************************************************97 PP | |||||||
2 | START | 158.7 | 4.4e-50 | 176 | 380 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+ Bv9_207830_hxcw.t1 176 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGT 265 7899******************************************************.7777777777***********999999999** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 ++l++++ +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++ +++ ++++Ra +lpSg+li+p+++g+s +++v+h +l++++++++ Bv9_207830_hxcw.t1 266 IELIYTQIYAPTTLAPaRDFWTLRYSTTLENGSVVVCERSLSGSGPNTAAPQFIRADMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEV 356 **********************************************999****************************************** PP HHHHHHHHHHHHHHHHHHHTXXXX CS START 181 lrslvksglaegaktwvatlqrqc 204 lr+l++s+ + ++k++ a+l++ + Bv9_207830_hxcw.t1 357 LRPLYQSSKVVAQKMTIAALRYIR 380 *******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 15 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.661 | 32 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-16 | 34 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-16 | 37 | 97 | No hit | No description |
SuperFamily | SSF46689 | 3.81E-16 | 37 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.2E-16 | 38 | 95 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.70E-6 | 89 | 128 | No hit | No description |
PROSITE profile | PS50848 | 25.829 | 166 | 391 | IPR002913 | START domain |
CDD | cd08875 | 2.23E-69 | 170 | 383 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.5E-18 | 175 | 363 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.06E-34 | 175 | 384 | No hit | No description |
SMART | SM00234 | 2.3E-40 | 175 | 382 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-47 | 176 | 380 | IPR002913 | START domain |
Gene3D | G3DSA:3.40.50.1860 | 2.3E-4 | 414 | 468 | IPR001920 | Asp/Glu racemase |
Pfam | PF08670 | 9.2E-50 | 703 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0016855 | Molecular Function | racemase and epimerase activity, acting on amino acids and derivatives | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MAMVAHRESS SGSGGSSGMS KHMTAAAAAA SAADAGKYVR YTSEQVEALE RVYAECPKPS 60 SLRRQQLIRE CPILSNIEPR QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN 120 DRLQKQVSQL VCENGFMRQQ LHTAPAMTTD GSCESVVTTT QHSLRDTNNP AGLLSIAEET 180 LAEFLSKATG TAVDWVQMPG MKPGPDSVGI FAISHRCSGV AARACGLVSL EPTKIAEILK 240 DRPSWFRDCR SLEVFTMFPA GNGGTIELIY TQIYAPTTLA PARDFWTLRY STTLENGSVV 300 VCERSLSGSG PNTAAPQFIR ADMLPSGYLI RPCDGGGSII HIVDHLNLEA WSVPEVLRPL 360 YQSSKVVAQK MTIAALRYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLNR GFNDAINGFT 420 DDGWTMLNCD GAEDVIIACN TAKTFMATLN AASSLPMVGG VLCAKASMLL QNVPPAVLVR 480 FLREHRSEWA DFSVDAYSAA ALKANSYAFP GMRATRFTGS QIIMPLGHTI ENEEMLEVIR 540 LEGHSLTPED AYISRDIHLL QICIGIDENA VGACSELVFA PIDEMFPDDA PLLPSGFRII 600 PLDSKPEAAT NRTLDLTSSL EVGPSSNHGA ADATSSGSNR SVLTIAFQFP FESSLQENVA 660 TMARQYVRSV ISSVQRVAMA ISPSGLSPTV GPKLSPGSPE ALTLAHWICQ SYSYHMGAEL 720 LRTSSAADET VLKHLWHHQD AIVCCSLKSL PVLIFANQAG LDMLETTLVA LQDVTLDKIF 780 DDSGRKSLCA DFPKIMQQGY ACLPAGVCTS TMGRHVSYDQ AIAWKVFAAD ETTVHCLAFT 840 FVNWSFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689538.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A0J8BQ02 | 0.0 | A0A0J8BQ02_BETVU; Uncharacterized protein | ||||
STRING | VIT_06s0004g02800.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |